PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0093200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 275aa    MW: 30589.9 Da    PI: 10.8667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0093200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.4e-08108154354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + h +rEr+RR+r+ ++++ L  ++ ++     +K +K +i+  A  Y++ L
  Spipo3G0093200 108 MRHMMRERQRRERLSQSYADLYHMIHPQ-----PKTDKNSIVLAAAAYVRGL 154
                     6799*********************997.....6**************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-12104172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.011105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-5108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-10109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-5111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAAAPPTMED LSFWSDAIPW GMFALEEESA AAPTGEELLR LESASPAPPP PPPVQGSAFR  60
SYDRERRRVG GGGGGGGRVN IHRRVMEYLR RMPVQKREKR EAECSRSMRH MMRERQRRER  120
LSQSYADLYH MIHPQPKTDK NSIVLAAAAY VRGLKRTVGA LQRQHQQLRS AVAASGGERA  180
EGATIRFRVG NPSSPVDSMI AALKRLKSMD VKAKSIRSVA GDRELSAVVD VQTEMTTNEV  240
ETAVQRALVE VEWKLRNRPK VNEDVRRGPP DVSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777863.19e-61PREDICTED: transcription factor bHLH92-like
SwissprotQ75KV92e-43BH148_ORYSJ; Transcription factor BHLH148
TrEMBLM0SIU82e-54M0SIU8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P29320_0016e-54(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.18e-19bHLH family protein